BLAST

We use BLAT to improve search efficiency.


Example output
# Query_id Subject_id %identity alignment_length mismatches gap_openings query_start query_end subject_start subject_end e-value bit_score
ENSG00000000003_dog1 ENSG00000000003_dog1 100.00 2000 0 0 1 2000 1 2000 0.0e+00 3877.0
ENSG00000000003_dog1 ENSG00000000003_dog2 100.00 2000 0 0 1 2000 501 2500 0.0e+00 3877.0
ENSG00000000003_dog1 ENSG00000000003_dog3 100.00 2000 0 0 1 2000 5501 7500 0.0e+00 3877.0
ENSG00000000003_dog1 ENSG00000273720_dog2 94.39 303 16 1 1572 1874 21615 21916 4.9e-153 537.0
ENSG00000000003_dog1 ENSG00000126882_dog1 93.62 298 19 0 1577 1874 3399 3696 1.9e-150 529.0

e